3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02310

Details:

PFam ID : PF02310

PFam Domain Description : B12 binding domain

Number of Sequence in 50% Dataset : 546

Number of Sequence in Full Dataset : 3221

Average sequence length: 115.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02310	F2NET5_9DELT_55_122	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02310	A4MVX1_HAEIF_1_63	98.6

Sequence based PCA Plot of the family - PF02310 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=52 Length=8
Motif4 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay