3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02309

Details:

PFam ID : PF02309

PFam Domain Description : AUX/IAA family

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 745

Average sequence length: 178.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02309	D8R2H9_SELML_5_175	67.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02309	D6MKI9_9ASPA_18_134	99.0

Sequence based PCA Plot of the family - PF02309 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=20
Motif2 Start=272 Length=8
Motif3 Start=261 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay