3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02308

Details:

PFam ID : PF02308

PFam Domain Description : MgtC family

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 929

Average sequence length: 131.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02308	B5USU3_BACCE_11_51	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02308	C5UUE4_CLOBO_1_79	100

Sequence based PCA Plot of the family - PF02308 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=36 Length=8
Motif2 Start=8 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay