3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02306

Details:

PFam ID : PF02306

PFam Domain Description : Major spike protein (G protein)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 10

Average sequence length: 145.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02306	B7AJX1_9BACE_9_148	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02306	Q2LM94_9VIRU_1_181	100

Sequence based PCA Plot of the family - PF02306 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay