3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02305

Details:

PFam ID : PF02305

PFam Domain Description : Capsid protein (F protein)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 35

Average sequence length: 298.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02305	B7AJX1_9BACE_9_148	26.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02305	F0F5W9_9BACT_225_531	100

Sequence based PCA Plot of the family - PF02305 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=132 Length=8
Motif4 Start=169 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay