3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02303

Details:

PFam ID : PF02303

PFam Domain Description : Helix-destabilising protein

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 32

Average sequence length: 82.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02303	A4G5A0_HERAR_1_90	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02303	B7WUL0_COMTE_1_95	100

Sequence based PCA Plot of the family - PF02303 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay