3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02301

Details:

PFam ID : PF02301

PFam Domain Description : HORMA domain

Number of Sequence in 50% Dataset : 150

Number of Sequence in Full Dataset : 429

Average sequence length: 183.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02301	Q4U9W2_THEAN_11_247	90.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02301	E2QRP7_MOUSE_27_65	99.5

Sequence based PCA Plot of the family - PF02301 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=226 Length=8
Motif3 Start=91 Length=8
Motif4 Start=15 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay