3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02297

Details:

PFam ID : PF02297

PFam Domain Description : Cytochrome oxidase c subunit VIb

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 287

Average sequence length: 66.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02297	E4XXG6_OIKDI_36_100	82.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02297	E4XXG6_OIKDI_36_100	94.7

Sequence based PCA Plot of the family - PF02297 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=12 Length=17
Motif3 Start=82 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay