3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02296

Details:

PFam ID : PF02296

PFam Domain Description : Alpha adaptin AP2, C-terminal domain

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 105

Average sequence length: 110.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02296	A2GKQ5_TRIVA_756_848	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02296	A7TL58_VANPO_913_1031	100

Sequence based PCA Plot of the family - PF02296 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=57 Length=11
Motif3 Start=74 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay