3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02291

Details:

PFam ID : PF02291

PFam Domain Description : Transcription initiation factor IID, 31kD subunit

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 155

Average sequence length: 113.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02291	A8PX07_MALGO_1_40	60.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02291	F2U4U6_9EUKA_55_197	100

Sequence based PCA Plot of the family - PF02291 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=18
Motif2 Start=51 Length=8
Motif3 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay