3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02289

Details:

PFam ID : PF02289

PFam Domain Description : Cyclohydrolase (MCH)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 123

Average sequence length: 276.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02289	A5JHE4_9EURY_1_80	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02289	E1R264_SPISS_3_319	100

Sequence based PCA Plot of the family - PF02289 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=58 Length=8
Motif4 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay