3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02288

Details:

PFam ID : PF02288

PFam Domain Description : Dehydratase medium subunit

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 115

Average sequence length: 110.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02288	A5ZM61_9FIRM_1_54	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02288	D5XBU7_THEPJ_9_124	100

Sequence based PCA Plot of the family - PF02288 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=2 Length=8
Motif4 Start=37 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay