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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02287
Details:

PFam ID : PF02287

PFam Domain Description : Dehydratase small subunit

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 59

Average sequence length: 132.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF02287D2K9J1_LACRE_1_272No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF02287E6TKK4_MYCSR_1_109100
Sequence based PCA Plot of the family - PF02287 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=63 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay