3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02286

Details:

PFam ID : PF02286

PFam Domain Description : Dehydratase large subunit

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 49

Average sequence length: 504.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02286	D2K9J1_LACRE_1_272	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02286	E3Z6Q5_LISIN_1_163	100

Sequence based PCA Plot of the family - PF02286 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=212 Length=8
Motif3 Start=117 Length=8
Motif4 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay