3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02284

Details:

PFam ID : PF02284

PFam Domain Description : Cytochrome c oxidase subunit Va

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 89

Average sequence length: 101.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02284	A8ST07_RIFPA_2_71	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02284	E4XH86_OIKDI_35_136	98.8

Sequence based PCA Plot of the family - PF02284 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=1 Length=8
Motif3 Start=15 Length=8
Motif4 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay