3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02283

Details:

PFam ID : PF02283

PFam Domain Description : Cobinamide kinase / cobinamide phosphate guanyltransferase

Number of Sequence in 50% Dataset : 134

Number of Sequence in Full Dataset : 810

Average sequence length: 161.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02283	C5N205_STAA3_1_45	79.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02283	C4ZBD6_EUBR3_3_207	100

Sequence based PCA Plot of the family - PF02283 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=192 Length=11
Motif2 Start=32 Length=20
Motif3 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay