3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02281

Details:

PFam ID : PF02281

PFam Domain Description : Transposase Tn5 dimerisation domain

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 50

Average sequence length: 92.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02281	A4BR42_9GAMM_1_70	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02281	Q7MP08_VIBVY_34_144	100

Sequence based PCA Plot of the family - PF02281 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay