3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02275

Details:

PFam ID : PF02275

PFam Domain Description : Linear amide C-N hydrolases, choloylglycine hydrolase family

Number of Sequence in 50% Dataset : 162

Number of Sequence in Full Dataset : 544

Average sequence length: 268.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02275	E1ZKX1_9CHLO_24_389	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02275	C1E7W0_MICSR_147_352	99.6

Sequence based PCA Plot of the family - PF02275 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=136 Length=11
Motif2 Start=96 Length=8
Motif3 Start=259 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay