3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02274

Details:

PFam ID : PF02274

PFam Domain Description : Amidinotransferase

Number of Sequence in 50% Dataset : 207

Number of Sequence in Full Dataset : 997

Average sequence length: 290.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02274	D2ANC2_FRATE_4_109	91.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02274	A8JGG9_CHLRE_318_412	99.7

Sequence based PCA Plot of the family - PF02274 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay