3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02272

Details:

PFam ID : PF02272

PFam Domain Description : DHHA1 domain

Number of Sequence in 50% Dataset : 165

Number of Sequence in Full Dataset : 3861

Average sequence length: 66.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02272	E3KJL0_PUCGT_894_955	76.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02272	B8FCV5_DESAA_255_326	88

Sequence based PCA Plot of the family - PF02272 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay