3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02271

Details:

PFam ID : PF02271

PFam Domain Description : Ubiquinol-cytochrome C reductase complex 14kD subunit

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 172

Average sequence length: 100.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02271	E4XA65_OIKDI_96_201	56.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02271	D8LK78_ECTSI_3_109	100

Sequence based PCA Plot of the family - PF02271 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=34
Motif2 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay