3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02270

Details:

PFam ID : PF02270

PFam Domain Description : Transcription initiation factor IIF, beta subunit

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 197

Average sequence length: 179.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02270	Q4UAU4_THEAN_47_236	88.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02270	B6AB82_CRYMR_150_257	99.4

Sequence based PCA Plot of the family - PF02270 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=121 Length=8
Motif4 Start=143 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay