3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02269

Details:

PFam ID : PF02269

PFam Domain Description : Transcription initiation factor IID, 18kD subunit

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 165

Average sequence length: 87.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02269	A2D9Z1_TRIVA_5_88	72.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02269	D8TXQ4_VOLCA_134_237	100

Sequence based PCA Plot of the family - PF02269 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay