3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02268 Details: PFam ID : PF02268 PFam Domain Description : Transcription initiation factor IIA, gamma subunit, helical domain Number of Sequence in 50% Dataset : 12 Number of Sequence in Full Dataset : 91 Average sequence length: 47.5 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF02268E9CH79_9EUKA_1_4863.6 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF02268A8ICC6_CHLRE_1_49100 Sequence based PCA Plot of the family - PF02268 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=24 Length=8Motif2 Start=15 Length=8Motif3 Start=35 Length=8Motif4 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF02268
PFam Domain Description : Transcription initiation factor IIA, gamma subunit, helical domain
Number of Sequence in 50% Dataset : 12
Number of Sequence in Full Dataset : 91
Average sequence length: 47.5
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER