3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02264

Details:

PFam ID : PF02264

PFam Domain Description : LamB porin

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 246

Average sequence length: 363.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02264	A3RSP5_RALSO_2_112	98.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02264	E7RYZ6_9BURK_37_475	100

Sequence based PCA Plot of the family - PF02264 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=318 Length=8
Motif2 Start=37 Length=8
Motif3 Start=428 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay