3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02263

Details:

PFam ID : PF02263

PFam Domain Description : Guanylate-binding protein, N-terminal domain

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 347

Average sequence length: 202.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02263	C3ZS19_BRAFL_124_228	89.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02263	C3ZC89_BRAFL_585_724	100

Sequence based PCA Plot of the family - PF02263 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=110 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay