3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02261

Details:

PFam ID : PF02261

PFam Domain Description : Aspartate decarboxylase

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 566

Average sequence length: 114.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02261	B1I1G3_DESAP_12_56	37.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02261	F2IFP5_9FLAO_1_114	100

Sequence based PCA Plot of the family - PF02261 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=6 Length=18
Motif2 Start=31 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay