3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02260

Details:

PFam ID : PF02260

PFam Domain Description : FATC domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 444

Average sequence length: 32.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02260	E7R0W4_PICAD_3354_3382	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02260	Q0CU63_ASPTN_1941_1965	100

Sequence based PCA Plot of the family - PF02260 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=13 Length=11
Motif2 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay