3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02259

Details:

PFam ID : PF02259

PFam Domain Description : FAT domain

Number of Sequence in 50% Dataset : 239

Number of Sequence in Full Dataset : 541

Average sequence length: 326.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02259	A9SH90_PHYPA_3083_3473	98.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02259	F2UJM0_9EUKA_1805_2268	97.9

Sequence based PCA Plot of the family - PF02259 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=300 Length=8
Motif2 Start=256 Length=8
Motif3 Start=4 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay