3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02256

Details:

PFam ID : PF02256

PFam Domain Description : FF domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 451

Average sequence length: 58.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02256	E1Z2L5_9CHLO_29_73	80.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02256	B8D0X4_HALOH_511_570	100

Sequence based PCA Plot of the family - PF02256 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=23 Length=8
Motif3 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay