3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02254

Details:

PFam ID : PF02254

PFam Domain Description : TrkA-N domain

Number of Sequence in 50% Dataset : 692

Number of Sequence in Full Dataset : 4137

Average sequence length: 115.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02254	F2MZ52_PSEST_49_106	78.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02254	C0AX68_9ENTR_1_81	99.9

Sequence based PCA Plot of the family - PF02254 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=25 Length=8
Motif3 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay