3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02249

Details:

PFam ID : PF02249

PFam Domain Description : Methyl-coenzyme M reductase alpha subunit, C-terminal domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 412

Average sequence length: 115.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02249	B5L2C3_9SECO_855_963	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02249	A1XW10_9EURY_1_116	100

Sequence based PCA Plot of the family - PF02249 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=64 Length=8
Motif2 Start=2 Length=18
Motif3 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay