3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02247

Details:

PFam ID : PF02247

PFam Domain Description : Large coat protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 22

Average sequence length: 287.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02247	E0YN31_9SECO_388_524	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02247	POL2_APMV_414_787	100

Sequence based PCA Plot of the family - PF02247 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=196 Length=8
Motif3 Start=129 Length=8
Motif4 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay