3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02245

Details:

PFam ID : PF02245

PFam Domain Description : Methylpurine-DNA glycosylase (MPG)

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 539

Average sequence length: 181.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02245	C6YP25_FRATT_5_100	77.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02245	D2R4B8_PIRSD_6_256	100

Sequence based PCA Plot of the family - PF02245 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=152 Length=14
Motif3 Start=37 Length=8
Motif4 Start=241 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay