3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02244

Details:

PFam ID : PF02244

PFam Domain Description : Carboxypeptidase activation peptide

Number of Sequence in 50% Dataset : 143

Number of Sequence in Full Dataset : 423

Average sequence length: 72.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02244	E9HTP0_DAPPU_31_74	78.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02244	E9H949_DAPPU_11_93	100

Sequence based PCA Plot of the family - PF02244 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay