3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02241

Details:

PFam ID : PF02241

PFam Domain Description : Methyl-coenzyme M reductase beta subunit, C-terminal domain

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 41

Average sequence length: 245.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02241	Q649Z7_9ARCH_202_449	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02241	Q649Z7_9ARCH_202_449	100

Sequence based PCA Plot of the family - PF02241 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=189 Length=8
Motif2 Start=114 Length=8
Motif3 Start=155 Length=8
Motif4 Start=178 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay