3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02240

Details:

PFam ID : PF02240

PFam Domain Description : Methyl-coenzyme M reductase gamma subunit

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 40

Average sequence length: 240.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02240	Q0RI51_FRAAA_273_334	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02240	Q9HHA9_METBA_5_234	100

Sequence based PCA Plot of the family - PF02240 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=110 Length=8
Motif2 Start=148 Length=8
Motif3 Start=91 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay