3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02239

Details:

PFam ID : PF02239

PFam Domain Description : Cytochrome D1 heme domain

Number of Sequence in 50% Dataset : 132

Number of Sequence in Full Dataset : 1777

Average sequence length: 211.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02239	Q0RI51_FRAAA_273_334	83.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02239	Q9LCB0_RUBGE_1_99	94.6

Sequence based PCA Plot of the family - PF02239 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=190 Length=8
Motif2 Start=235 Length=8
Motif3 Start=220 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay