3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02237

Details:

PFam ID : PF02237

PFam Domain Description : Biotin protein ligase C terminal domain

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 913

Average sequence length: 47.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02237	D8PZQ7_SCHCM_615_682	20.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02237	Q72NN9_LEPIC_206_246	98.2

Sequence based PCA Plot of the family - PF02237 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=36 Length=8
Motif3 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay