3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02233

Details:

PFam ID : PF02233

PFam Domain Description : NAD(P) transhydrogenase beta subunit

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 561

Average sequence length: 413.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02233	D8LUY9_BLAHO_4_499	75.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02233	C9SRM4_VERA1_653_708	99.8

Sequence based PCA Plot of the family - PF02233 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=81 Length=8
Motif3 Start=31 Length=8
Motif4 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay