3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02229

Details:

PFam ID : PF02229

PFam Domain Description : Transcriptional Coactivator p15 (PC4)

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 211

Average sequence length: 84.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02229	A8JH22_CHLRE_117_149	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02229	F2UBZ1_9EUKA_46_172	100

Sequence based PCA Plot of the family - PF02229 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=8
Motif2 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay