3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02228

Details:

PFam ID : PF02228

PFam Domain Description : Major core protein p19

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 13

Average sequence length: 70.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02228	A7KWZ1_BLV_1_77	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02228	B8LHL8_9DELA_1_90	100

Sequence based PCA Plot of the family - PF02228 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=11
Motif2 Start=14 Length=8
Motif3 Start=5 Length=8
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay