3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02224

Details:

PFam ID : PF02224

PFam Domain Description : Cytidylate kinase

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 1185

Average sequence length: 155.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02224	A0Y5A6_9GAMM_1_47	96

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02224	D0RRD1_9RICK_494_655	100

Sequence based PCA Plot of the family - PF02224 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=11
Motif2 Start=137 Length=8
Motif3 Start=126 Length=8
Motif4 Start=70 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay