3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02223

Details:

PFam ID : PF02223

PFam Domain Description : Thymidylate kinase

Number of Sequence in 50% Dataset : 226

Number of Sequence in Full Dataset : 1657

Average sequence length: 182.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02223	B8Q5D5_9VIRU_5_116	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02223	C7PHF5_CHIPD_10_222	99.9

Sequence based PCA Plot of the family - PF02223 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=63 Length=11
Motif2 Start=131 Length=11
Motif3 Start=77 Length=29
Motif4 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay