3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02222

Details:

PFam ID : PF02222

PFam Domain Description : ATP-grasp domain

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 1262

Average sequence length: 170.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02222	Q97TG3_CLOAB_162_333	69.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02222	Q83IF3_TROW8_128_248	100

Sequence based PCA Plot of the family - PF02222 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=70 Length=19
Motif2 Start=142 Length=11
Motif3 Start=25 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay