3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02221

Details:

PFam ID : PF02221

PFam Domain Description : ML domain

Number of Sequence in 50% Dataset : 145

Number of Sequence in Full Dataset : 424

Average sequence length: 123.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02221	C5I770_MICSA_1_55	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02221	C1BWY2_ESOLU_38_164	99.7

Sequence based PCA Plot of the family - PF02221 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=22 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay