3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02219

Details:

PFam ID : PF02219

PFam Domain Description : Methylenetetrahydrofolate reductase

Number of Sequence in 50% Dataset : 168

Number of Sequence in Full Dataset : 1370

Average sequence length: 269.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02219	Q30BY1_HUMAN_1_39	71.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02219	D5HF48_9FIRM_1_86	99.9

Sequence based PCA Plot of the family - PF02219 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=283 Length=11
Motif2 Start=222 Length=8
Motif3 Start=111 Length=14
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay