3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02214

Details:

PFam ID : PF02214

PFam Domain Description : K+ channel tetramerisation domain

Number of Sequence in 50% Dataset : 159

Number of Sequence in Full Dataset : 908

Average sequence length: 90.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02214	A9VBC1_MONBE_12_88	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02214	B0E6Q5_ENTDI_193_276	100

Sequence based PCA Plot of the family - PF02214 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=17
Motif2 Start=85 Length=8
Motif3 Start=115 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay