3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02213

Details:

PFam ID : PF02213

PFam Domain Description : GYF domain

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 336

Average sequence length: 54.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02213	A8XA23_CAEBR_184_234	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02213	Q876B8_SACSE_167_230	100

Sequence based PCA Plot of the family - PF02213 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=8
Motif2 Start=20 Length=17
Motif3 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay