3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02212

Details:

PFam ID : PF02212

PFam Domain Description : Dynamin GTPase effector domain

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 412

Average sequence length: 90.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02212	Q38KF5_TETTH_579_676	70.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02212	D8TIH3_VOLCA_707_805	100

Sequence based PCA Plot of the family - PF02212 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=68 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay